Install massqc

Xiaotao Shen (https://www.shenxt.info/)

Created on 2021-12-26 and updated on 2022-09-19

Source: vignettes/massqc_install.Rmd

Install massqc from GitLab

You can just use the remotes to install massqc.

remotes::install_gitlab("tidymass/massqc", dependencies = TRUE)

During the installation, it will ask if you want to update some packages for few times, just press enter key to skip it.

Install massqc from GitHub

You can just use the remotes to install massqc.

remotes::install_github("tidymass/massqc", dependencies = TRUE)

During the installation, it will ask if you want to update some packages for few times, just press enter key to skip it.

If there is a error like below:

Error: Failed to install 'massqc' from GitHub: HTTP error 403. API rate limit exceeded for 171.66.10.237. (But here's the good news: Authenticated requests get a higher rate limit. Check out the documentation for more details.)

Try to resolve it by:

  1. In you R console, type this code:

It will open a page in browser, and create a “New personal access token” and copy it.

  1. Then type this code:
usethis::edit_r_environ()

and then add one line like below:

GITHUB_PAT=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

The GITHUB_PAT should be yours that is created in step 1.

And then restart R session and try again.

Frequently Asked Questions

  1. Can not install dependent packages raster and Cario

raster is a package in CRAN, try to install it first and then install massqc.

Cario is a package in CRAN, try to install it first and then install massqc.

Session information 

sessionInfo()
#> R version 4.1.2 (2021-11-01)
#> Platform: x86_64-apple-darwin17.0 (64-bit)
#> Running under: macOS Big Sur 10.16
#> 
#> Matrix products: default
#> BLAS:   /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRblas.0.dylib
#> LAPACK: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRlapack.dylib
#> 
#> locale:
#> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
#> 
#> attached base packages:
#> [1] stats     graphics  grDevices utils     datasets  methods   base     
#> 
#> loaded via a namespace (and not attached):
#>  [1] rstudioapi_0.13   knitr_1.37        magrittr_2.0.2    R6_2.5.1         
#>  [5] ragg_1.2.1        rlang_1.0.1       fastmap_1.1.0     stringr_1.4.0    
#>  [9] tools_4.1.2       xfun_0.29         cli_3.2.0         jquerylib_0.1.4  
#> [13] htmltools_0.5.2   systemfonts_1.0.3 yaml_2.3.4        digest_0.6.29    
#> [17] rprojroot_2.0.2   pkgdown_2.0.2     crayon_1.5.0      textshaping_0.3.6
#> [21] purrr_0.3.4       sass_0.4.0        fs_1.5.2          memoise_2.0.1    
#> [25] cachem_1.0.6      evaluate_0.15     rmarkdown_2.11    stringi_1.7.6    
#> [29] compiler_4.1.2    bslib_0.3.1       desc_1.4.0        jsonlite_1.7.3